PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G235000.1
Common NamePHAVU_001G235000g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 256aa    MW: 28833.4 Da    PI: 8.6713
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G235000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.9e-055880123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y+C+ C++ F++   L  H+++H
  Phvul.001G235000.1 58 YSCNFCKREFRSAQALGGHMNVH 80
                        99*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.78E-65585No hitNo description
PROSITE profilePS5015711.2195885IPR007087Zinc finger, C2H2
PfamPF139126.9E-65881IPR007087Zinc finger, C2H2
SMARTSM003550.00725880IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806080IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MEESQYLLWF KRKQMLNSHI QQPFGARNNN TNSSWEERAF AEDAARILGG CIWPPRSYSC  60
NFCKREFRSA QALGGHMNVH RRDRARLKQS LSHHNESLQD LHKNDCPVAT SKVSSSRPST  120
ISTQENCYHQ PTMSPYSSPI SWGHHHMGSP DSEPKGSAVN GREQFLKGLG CNDYVETSLS  180
VGQSSVFVQK LPIESYGDEA ISYKRSKTSM PPLPAFHKPC SSDRHLTFHS AEFVLKPGME  240
DLDLELRLGK PQKVI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2l1o_A8e-135380229Transcriptional regulator SUPERMAN
1njq_A8e-135380229superman protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007163443.10.0hypothetical protein PHAVU_001G235000g
TrEMBLV7CZ300.0V7CZ30_PHAVU; Uncharacterized protein
STRINGGLYMA18G04030.11e-150(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17763078
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.17e-28zinc-finger protein 10